---
name: project-obsidian-vault-practice
description: "Canonical tracker for the Obsidian vault workstream — turning root-and-branch from an archive into a practice, beginning with a ratified Frontmatter Specification v1.0.0. Holds the operational facts (the vault is NOT a git repo; it mirrors to ~/_Dev/david-root-and-branch-vault-git), the applied-pass record, and the open tail. Read before any vault work."
metadata:
  node_type: memory
  type: project
  modified: 2026-08-20T09:08:17Z
---

# Obsidian vault — from archive to practice

**Steward's goal, stated 2026-08-19:** *"optimizing my Obsidian usage and setting up a regular
workflow to have the important parts of our work captured there… My instinct is that I could
make better use of it. I want to create an Obsidian 'spec' like we have done for all of our
serious projects."*

**The tool boundary, from the steward, so it is not re-elicited:**

| tool | role |
|---|---|
| **Drafts.app** | scratchpad; ephemeral text, or text destined elsewhere. Kept essentially empty at the end of every week. |
| **Notes.app** (Mac/iOS) | confidential material, as locked notes. |
| **Obsidian** (`root-and-branch`) | notes that must not be lost. *"So far, a sort of archive."* |

**Scope note:** the vault is *also* the Compass — the steward's personal operating system.
`~/CLAUDE.md` says: reference it, never write to it. **That standing rule was suspended for this
workstream by explicit authorization** (`"I authorize the Compass ones too"`, 2026-08-19), for
the named mechanical passes only. It is not a general licence.

---

## Operational facts — do not re-derive

- **The vault folder is NOT a git repository.** `~/Library/Mobile Documents/iCloud~md~obsidian/Documents/David, root-and-branch`
  has no `.git`.
- **It mirrors to `~/_Dev/david-root-and-branch-vault-git`** (remote:
  `git.skemantix.com/David/david-root-and-branch-vault-git`). An automated job commits
  `Mirror sync <timestamp>` on its own schedule — so steward hand-edits land in git without
  anyone asking.
- **Working reports and machine-readable changelogs live in `~/dotfiles/obsidian/`**:
  `vault-frontmatter-inventory-2026-08-19.md`, `vault-frontmatter-pass1-followups-2026-08-19.md`,
  `vault-governance-block-round2-2026-08-19.md`, `vault-round3-archive-and-relations-2026-08-19.md`,
  plus `fm_inventory.json`, `pass2-changelog.json`, `pass2-flags.json`.
- **The spec is in the vault, not in dotfiles:** `00. Compass/Frontmatter Specification.md`.
- ⚠ **`verify-before-compose.sh` fires on `Write|Edit`, and this work runs through Bash.** A vault
  hook wired the same way would not fire on how the work actually runs. Noted 2026-08-19, unfixed.

---

## Chronological log

### 2026-08-19 — census, spec, two passes (session died unwrapped; see [[session-2026-08-19-the-vault-got-a-spec-the-links-were-already-broken]])

- **Four read-only census rounds before any edit.** 2,519 notes parsed, no sampling. 400 distinct
  keys over 5,867 instances; **68% of notes have no frontmatter at all.** 66 keys consumed, 29
  written-by-template-and-read-by-nothing, 305 orphaned.
- **Round 2/3 findings that changed the design:** `owner` was one job in three spellings (cut);
  `canonical` was **one name doing two jobs** (self-descriptive vs pointer-elsewhere); the
  hypothesis that pointer-form marks archival **tested negative** — 65 of 67 pointers sit outside
  `99. Archive`. What actually distinguishes Archive is **decay in practice, declaration in name
  only**: `status: archived` on 2.3% of it, 90% receiving no wikilink from any live note, and **no
  archival policy note anywhere in the vault.**
- **Frontmatter Specification v1.0.0 ratified** and placed in `00. Compass/`. First principle:
  *storage and lifecycle are orthogonal* — the folder says nothing; only `status:` declares.
- **Pass 1 and pass 2 applied and pushed.** `949ff14` `31d8e1f` `3d47bd2` `00e741d` `4c364e9`
  `fab8fb0` (**511 edits / 268 files**) `aee615d`.
- **End state:** `owner` 0 · `change_log` 0 · `domain` 0 · `revisions` 90 · `canonical` 159 ·
  `see_canonical` 3 · `confidence` 9 · `links` 8 kept-and-flagged. **YAML parse errors 16,
  unchanged.**
- **Two executor tooling defects caught before applying** (§6 handler covered block-style lists
  only — would have done 29 notes of 90 and reported success; §7 logged a retirement it did not
  perform). Both found by **re-censusing an applied copy, not by reading the changelog.**
- **The jurist corrected its own "88 recoverable" reading**: those were self-descriptive values
  resolving to themselves by construction. **Only 3 of 66 pointers were genuinely recoverable.**

### 2026-08-20 — the steward opened Obsidian, and the links were already broken

Checked against the mirror's history, not inferred. **Coffee log** (`brew_temp: [[94–96°C]]`) and
**homeopathy** (`[[Ignatia amara — The Medicine of the Sigh]]` naming a *title* where the file is
`Ignatia amara.md`) are both **pre-existing**; pass 2 never touched the homeopathy note and
touched only `linked_note`→`linked_daily_note` in the coffee log.

**But the passes are not innocent.** §7 flattened nested `links.parents` — inert YAML Obsidian did
not render — into top-level `parents/children/peers`, which **made 194 already-unresolvable targets
render as clickable-and-broken in the properties UI.** The breakage was surfaced, not created. The
pass report did not predict this, and it should have.


### 2026-08-23 — status check: four items verified against substrate, and one NEW regression found

Asked where the workstream stood; verified rather than relayed. **Items 1–4 confirmed live**, with
two unit corrections: `related` was counted by the tracker in *targets* (194 unresolvable) and a
file-count (122 notes / 213 targets now) is not comparable to it; and `canonical: 159` is a
**frontmatter** count — a naive `grep '^canonical:'` returns 239 because it also catches body text.
The tracker was right and the quick instrument was wrong. YAML parse errors independently
re-measured at **16**, matching.

⚠ **NEW — the vault has a write path the spec does not govern, and it silently reverted pass 2.**
Mirror sync `a58fc00` (2026-08-22 23:52) changed 14 files and ran *against* the spec:
`owner` **0 → 9**, `change_log` **0 → 9**, `revisions` **90 → 81**, and `canonical: true` was
replaced by pointer-form paths. All 9 sit in one subtree,
`08. Notes/CapableMind/thinking-mirror/chamber/archive/orientation/`.

**Mechanism — SUPERSEDES the first reading filed earlier the same day.** The earlier entry named
*"a job mirrors `docs/thinking/David/`"* and pointed at the launchd agent. **Wrong agent.** Matching
upstream content is not evidence of which path wrote it, and the launchd job targets a different
folder entirely. The actual writer is **`/wrap-up` §7**, which rsyncs
`~/_Dev/CapableMind-AI/docs/thinking/David/` → `08. Notes/CapableMind/thinking-mirror/` **at every
wrap**. The 2026-08-22 wrap ran it at 23:42; vaultsync committed the result at 23:52 as `a58fc00`.

⚠ **There are TWO mirrors of the same source into two different vault folders, and neither knows
about the other:**

| writer | destination | state |
|---|---|---|
| `/wrap-up` §7 (every wrap) | `08. Notes/CapableMind/thinking-mirror` | **live** — 251 files, 0 diff from upstream |
| `com.dglidden.thinking-mirror` (launchd, 48 h) | `00. Compass/00b. Constellations/CapableMind/thinking-mirror` | **dead** — 151 files, 115 behind, frozen since 2026-03-13 |

**The launchd job is failing and cannot say so.** `launchctl list` reports last exit **1**; the
script ends `rsync … > /dev/null 2>&1`, so its own plist `StandardOutPath` receives nothing and the
log has been 0 bytes since 10 Mar. Precedent for the cause is in `session-ledger-2026-04-16.md`:
the *vaultsync* agent failed the same silent way for weeks — **macOS TCC / Full Disk Access, rsync
under launchd against an iCloud path, exit 23** — and was fixed by granting FDA. Same shape here,
never fixed. ⚠ **Exit 1 is not exit 23, so the TCC diagnosis is a strong hypothesis, NOT
established.** A manual `--dry-run` of the exact command succeeds (exit 0) when run interactively,
which is consistent with TCC but does not prove it.

**The reframe that resolves this: you do not edit a mirror.** Applying the frontmatter spec to a
derived tree is a category error — the edits cannot survive their next sync, and pass 2's edits to
both mirror trees were void the moment they were written. This is not misbehaviour by the mirror.

**Not fixed — the disposition is a design choice, not a [FIX]:** exclude the subtree from the spec's
scope · apply the spec upstream in CapableMind-AI · or declare mirrored notes not-spec-governed and
say so in the spec. Steward's call.

**Item 5 sharpened.** `01. Daily/` holds **11 notes, the most recent 2025-09-04** — nearly a year
old, and the Daily-Notes plugin is not configured. There is no dormant capture habit to revive; the
practice would be built from nothing. `00a. _inbox` holds 11 notes.


---

## Current state — OPEN

1. ⚠ **A defect of ours: `see_canonical: "[[Index]]"`** in `09. Atlas of Roots/00. Atlas of Roots — Index.md`,
   converted from `canonical: 09. Atlas of Roots/index.md`, **a file that does not exist**. The only
   `Index.md` notes are `08. Notes/Tools & Workflow/Index.md` and a Catalan `00. Index/index.md`.
   **It resolves to the wrong note or none — 1 of the 3 pointers §3 wrote.** Same basename flaw the
   jurist corrected as a *number* that afternoon, landed in an applied edit as a *mechanism*.
2. **194 unresolvable `related` targets**, left bare and flagged by §6.
3. **63 residual `canonical` pointers** — each a note that named an authority for itself and lost
   track of where it lives. Steward's eyes wanted here most: this is the population `canonical` was
   actually describing, invisible while 157 path-strings sat behind one field name.
4. **16 YAML parse errors**, unchanged across both passes — never in scope, never addressed.
5. **The actual goal has not been started.** Everything so far is hygiene on an archive. *"A regular
   workflow to have the important parts of our work captured there"* — the capture practice, the
   thing that would make the vault a practice rather than a tidier archive — **has not been
   designed.** Do not let the frontmatter tail stand in for it.
6. ✅ **RESOLVED 2026-08-23 — the two mirrors are now one, and it reports.** Steward chose: keep
   `/wrap-up` §7, retire the launchd agent. Done and verified: agent unloaded · plist removed from
   `~/Library/LaunchAgents/` **and from `~/dotfiles/config/capablemind/`** (load-bearing —
   `setup-capablemind.sh:135` copies every `*.plist` there into LaunchAgents, so leaving it would
   resurrect the retired job) · deployed script removed · stale tree deleted after three independent
   no-loss checks · `/wrap-up` §7 rewritten to name itself the only writer, forbid edits to the
   derived tree, and report the outcome with its exit code in §8 · spec bumped to **v1.0.1** with
   principle 7 + §1a declaring mirrored trees out of scope. Commit `f1c91d9`.
   **End state verified:** live archive 251 files, 0 diff from upstream; stale tree gone; agent gone.

---

## What remains — and what it is worth

Items 1–4 are the **frontmatter tail**: real, bounded, and *not the goal*. Item 5 is the goal.

- **1** is ours and wrong (one bad pointer) — smallest real debt, ~10 minutes once its correct
  target is decided.
- **2, 3** are steward-judgement work, not executor work: 73 pointer-form `canonical` values and
  213 `related` targets need an eye that knows what the notes *mean*.
- **4** (16 YAML parse errors) has never been in scope and is a session-sized bite.
- **5 — the capture practice — has still not been started**, and the 2026-08-23 check made it
  sharper, not smaller: `01. Daily/` holds 11 notes, newest **2025-09-04**, and the Daily Notes
  plugin is unconfigured. There is no dormant habit to revive.
  ⚠ Note for whoever designs it: `00. Compass/00b. Constellations/CapableMind/` already contains
  `daily-log/` and `sessions/` folders. **Read those before designing anything** — a capture
  practice may already have been attempted here, and re-inventing over it would be the third
  duplicate mirror in spirit.